STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30508.1Identified by match to protein family HMM PF00657. (196 aa)    
Predicted Functional Partners:
EFR30793.1
Phage minor structural protein, N-terminal domain protein; Identified by match to protein family HMM TIGR01665.
  
   0.887
EFR30747.1
Putative phage tail component domain protein; Identified by match to protein family HMM TIGR01633.
  
   0.773
EFR30722.1
Hypothetical protein.
   
  0.753
EFR30591.1
Prophage LambdaSa1, structural protein.
   
  0.753
EFR30456.1
Gram-positive signal peptide protein, YSIRK family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04650; match to protein family HMM PF05345; match to protein family HMM TIGR01168.
   
  0.753
EFR30495.1
Beta-eliminating lyase; Identified by match to protein family HMM PF01212.
  
    0.726
EFR30532.1
Hypothetical protein.
       0.693
EFR30522.1
Phospholipase, patatin family; Identified by match to protein family HMM PF01734.
       0.631
EFR30516.1
Hypothetical protein; Identified by glimmer; putative.
       0.616
EFR31652.1
Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF07859.
  
 
 0.434
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.