STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30467.1Flavin reductase; Identified by match to protein family HMM PF03358. (447 aa)    
Predicted Functional Partners:
EFR30959.1
Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF04205; match to protein family HMM PF07992; match to protein family HMM TIGR01813.
   
  0.972
EFR31669.1
Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF04205; match to protein family HMM TIGR01813.
  
  0.952
EFR30880.1
Fumarate reductase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF07992; match to protein family HMM TIGR01813; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
  0.845
EFR31567.1
Hypothetical protein.
   
  0.786
EFR30468.1
Flavin reductase; Identified by match to protein family HMM PF03358.
 
    
0.785
EFR30494.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
    
 0.645
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
    
 0.636
EFR31547.1
Identified by match to protein family HMM PF09084.
  
 
  0.575
EFR31552.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
  0.504
EFR31542.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 
  0.499
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.