STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30486.1Hypothetical protein; Identified by glimmer; putative. (600 aa)    
Predicted Functional Partners:
EFR30934.1
Hypothetical protein; Identified by glimmer; putative.
  
  
  0.804
EFR31880.1
Hypothetical protein.
 
 
  0.788
EFR31115.1
O-antigen polymerase; Identified by match to protein family HMM PF04932.
 
     0.741
EFR30524.1
Hypothetical protein; Identified by glimmer; putative.
       0.717
EFR31414.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.708
EFR30430.1
Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.
  
     0.704
EFR30705.1
Peptidase propeptide and YPEB domain protein; Identified by match to protein family HMM PF03413; match to protein family HMM PF09648.
  
     0.685
EFR30652.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.625
EFR30887.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.608
EFR31389.1
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167.
  
     0.596
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.