STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30795.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (259 aa)    
Predicted Functional Partners:
EFR30616.1
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livF
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
0.997
EFR30780.1
Identified by match to protein family HMM PF01094.
 
 
 0.993
EFR31661.1
Identified by match to protein family HMM PF01094.
 
 
 0.986
EFR30688.1
CBS domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00571; match to protein family HMM PF01842.
 
     0.846
ecsA
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
 
0.664
EFR31542.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
    
  0.641
EFR31547.1
Identified by match to protein family HMM PF09084.
    
  0.636
mutF
Mutacin ABC transporter, ATP-binding protein MutF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03740.
   
 
0.536
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.