STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30616.1Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (322 aa)    
Predicted Functional Partners:
livF
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.999
EFR30795.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.999
livH
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
0.999
EFR30780.1
Identified by match to protein family HMM PF01094.
 
 
 0.999
EFR31661.1
Identified by match to protein family HMM PF01094.
 
 
 0.992
glnQ
Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.
 
    
 0.909
glnQ-3
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
 0.909
glnQ-2
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
 0.908
EFR32070.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
  0.849
mutF
Mutacin ABC transporter, ATP-binding protein MutF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03740.
   
  0.847
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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