STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30744.1Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. (283 aa)    
Predicted Functional Partners:
EFR30705.1
Peptidase propeptide and YPEB domain protein; Identified by match to protein family HMM PF03413; match to protein family HMM PF09648.
  
  
 0.644
EFR30567.1
YycH protein; Identified by match to protein family HMM PF07435.
  
  
 0.640
EFR30695.1
Hypothetical protein; Identified by glimmer; putative.
       0.593
walR
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
  
 0.555
EFR30561.1
Hypothetical protein.
       0.511
EFR30573.1
PAS domain S-box protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
  
 0.494
EFR32046.1
Identified by match to protein family HMM PF06103.
   
    0.475
pdxB-2
4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
    0.446
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.