STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metNABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (355 aa)    
Predicted Functional Partners:
metQ
NLPA lipoprotein; Identified by match to protein family HMM PF03180.
 0.999
metI
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.999
EFR30670.1
NLPA lipoprotein; Identified by match to protein family HMM PF03180.
 
 0.997
EFR31266.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
     0.909
EFR31719.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.899
oppC-2
Oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.
 
 
  0.897
EFR30547.1
Iron dependent repressor DNA binding domain protein; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742.
    
   0.863
EFR30616.1
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
    0.840
EFR31107.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
  0.822
EFR30525.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
      0.763
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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