STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30421.1HAMP domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF06580. (557 aa)    
Predicted Functional Partners:
EFR30447.1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
 0.988
EFR30434.1
Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
 
   
 0.885
EFR31783.1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
   
   0.853
EFR31562.1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
   
   0.853
EFR31386.1
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397.
  
 
 0.824
msrB
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.797
EFR31775.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
  
  0.660
EFR31038.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
  
  0.601
EFR31901.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518.
     
 0.563
EFR31360.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.563
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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