Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFR30422.1 | EFR30458.1 | HMPREF9257_0860 | HMPREF9257_0861 | Transposase; Identified by match to protein family HMM PF01527. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.949 |
| EFR30422.1 | EFR31406.1 | HMPREF9257_0860 | HMPREF9257_1786 | Transposase; Identified by match to protein family HMM PF01527. | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | 0.601 |
| EFR30422.1 | EFR31407.1 | HMPREF9257_0860 | HMPREF9257_1785 | Transposase; Identified by match to protein family HMM PF01527. | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. | 0.637 |
| EFR30422.1 | czrA | HMPREF9257_0860 | HMPREF9257_0859 | Transposase; Identified by match to protein family HMM PF01527. | Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022. | 0.405 |
| EFR30433.1 | EFR30458.1 | HMPREF9257_0846 | HMPREF9257_0861 | Integrase core domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.771 |
| EFR30433.1 | EFR31406.1 | HMPREF9257_0846 | HMPREF9257_1786 | Integrase core domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | 0.773 |
| EFR30458.1 | EFR30422.1 | HMPREF9257_0861 | HMPREF9257_0860 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Transposase; Identified by match to protein family HMM PF01527. | 0.949 |
| EFR30458.1 | EFR30433.1 | HMPREF9257_0861 | HMPREF9257_0846 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Integrase core domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.771 |
| EFR30458.1 | EFR31406.1 | HMPREF9257_0861 | HMPREF9257_1786 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | 0.790 |
| EFR30458.1 | EFR31407.1 | HMPREF9257_0861 | HMPREF9257_1785 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. | 0.643 |
| EFR30458.1 | czrA | HMPREF9257_0861 | HMPREF9257_0859 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022. | 0.400 |
| EFR31406.1 | EFR30422.1 | HMPREF9257_1786 | HMPREF9257_0860 | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | Transposase; Identified by match to protein family HMM PF01527. | 0.601 |
| EFR31406.1 | EFR30433.1 | HMPREF9257_1786 | HMPREF9257_0846 | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | Integrase core domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.773 |
| EFR31406.1 | EFR30458.1 | HMPREF9257_1786 | HMPREF9257_0861 | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.790 |
| EFR31406.1 | EFR31407.1 | HMPREF9257_1786 | HMPREF9257_1785 | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. | 0.931 |
| EFR31407.1 | EFR30422.1 | HMPREF9257_1785 | HMPREF9257_0860 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. | Transposase; Identified by match to protein family HMM PF01527. | 0.637 |
| EFR31407.1 | EFR30458.1 | HMPREF9257_1785 | HMPREF9257_0861 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.643 |
| EFR31407.1 | EFR31406.1 | HMPREF9257_1785 | HMPREF9257_1786 | Transposase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01527. | Integrase core domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00665. | 0.931 |
| czrA | EFR30422.1 | HMPREF9257_0859 | HMPREF9257_0860 | Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022. | Transposase; Identified by match to protein family HMM PF01527. | 0.405 |
| czrA | EFR30458.1 | HMPREF9257_0859 | HMPREF9257_0861 | Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.400 |