STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31959.1ABC-2 type transporter; Identified by match to protein family HMM PF01061. (293 aa)    
Predicted Functional Partners:
EFR32070.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.980
EFR31994.1
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
 
     0.801
EFR30494.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
  
  
 0.769
EFR31002.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.644
EFR31399.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.644
EFR31967.1
Identified by match to protein family HMM PF01569.
 
     0.587
EFR31643.1
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
  
 0.523
ecsA
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.494
EFR32091.1
Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147.
       0.467
EFR30539.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.454
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.