STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31412.1ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (270 aa)    
Predicted Functional Partners:
EFR31425.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.999
EFR31423.1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
 0.999
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 0.995
EFR31714.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.930
EFR31787.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.783
EFR31577.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 0.732
EFR31685.1
ABC transporter, ATP-binding protein; Identified by glimmer; putative.
  
 0.619
EFR31696.1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
    
  0.519
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
  
  
 0.519
EFR31552.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
  0.414
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.