STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30968.1Identified by match to protein family HMM PF04304. (119 aa)    
Predicted Functional Partners:
EFR31297.1
Hydrolase, TatD family; Identified by match to protein family HMM PF01026.
 
     0.722
EFR31178.1
Identified by match to protein family HMM PF00899.
       0.686
EFR31057.1
Hypothetical protein; Identified by glimmer; putative.
       0.667
cydC
Thiol reductant ABC exporter, CydC subunit; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR02868.
    
  0.618
EFR31073.1
DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
       0.455
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.