STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30980.1Hypothetical protein. (249 aa)    
Predicted Functional Partners:
EFR31173.1
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
  
 0.983
EFR31069.1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.
 
  
 0.949
EFR31659.1
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.912
EFR30984.1
Hypothetical protein; Identified by glimmer; putative.
  
   
 0.817
EFR32136.1
DRTGG domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF07085.
  
     0.750
EFR31943.1
Hypothetical protein.
  
     0.660
cvpA
Identified by match to protein family HMM PF02674.
  
     0.655
EFR32067.1
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
 
    0.652
EFR30941.1
HesB-like protein.
       0.621
EFR31608.1
SNARE-like domain protein; Identified by match to protein family HMM PF09335.
  
   
 0.608
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.