STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31354.1Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. (473 aa)    
Predicted Functional Partners:
EFR31100.1
Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.
  
  
 0.910
EFR31037.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
 
 0.886
EFR30951.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
 
 0.841
EFR31115.1
O-antigen polymerase; Identified by match to protein family HMM PF04932.
 
  
 0.775
EFR30934.1
Hypothetical protein; Identified by glimmer; putative.
 
     0.756
galU
UTP--glucose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099.
    
 0.715
EFR31772.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
 
  
 0.684
EFR30567.1
YycH protein; Identified by match to protein family HMM PF07435.
  
     0.660
EFR32108.1
Acyltransferase; Identified by match to protein family HMM PF01757.
 
  
 0.652
galE
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.620
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.