STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31261.1Acyl-ACP thioesterase; Identified by match to protein family HMM PF01643. (255 aa)    
Predicted Functional Partners:
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.754
EFR30485.1
Hypothetical protein.
  
     0.633
EFR31071.1
Identified by match to protein family HMM PF08866.
  
     0.621
EFR30650.1
CBS domain protein; Identified by match to protein family HMM PF00571.
 
     0.572
EFR31184.1
Quinone oxidoreductase, YhdH/YhfP family; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823.
  
  
  0.551
EFR30934.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.508
EFR31866.1
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
  
     0.507
EFR31520.1
Identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906.
 
     0.481
EFR31568.1
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.
  
     0.466
EFR31180.1
Transglycosylase associated protein; Identified by match to protein family HMM PF04226.
       0.456
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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