STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31021.1Hypothetical protein. (774 aa)    
Predicted Functional Partners:
dam
DNA adenine methylase; Identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571.
 
     0.878
EFR31226.1
AlwI restriction endonuclease; Identified by match to protein family HMM PF09491.
       0.719
EFR31019.1
Hypothetical protein.
       0.675
EFR31040.1
Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.
 
     0.527
EFR31110.1
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
     0.448
EFR31559.1
RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281.
  
     0.432
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.