STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31241.1Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF01832. (229 aa)    
Predicted Functional Partners:
EFR32076.1
N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520; match to protein family HMM PF08239.
   
 
 0.785
EFR31346.1
Hypothetical protein.
       0.770
EFR31123.1
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.
   
 0.673
EFR31111.1
Phosphoribosylaminoimidazole carboxylase ATPase subunit; Identified by match to protein family HMM PF02222.
       0.583
EFR31664.1
Hypothetical protein.
      0.553
EFR32079.1
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
  
  
  0.513
EFR31767.1
Identified by match to protein family HMM PF00877.
 
   
 0.470
EFR31401.1
Putative endopeptidase LytE; Identified by match to protein family HMM PF01476.
 
    
 0.464
EFR31071.1
Identified by match to protein family HMM PF08866.
  
     0.438
EFR30934.1
Hypothetical protein; Identified by glimmer; putative.
       0.426
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.