STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31267.1Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (195 aa)    
Predicted Functional Partners:
EFR30971.1
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.836
EFR31221.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.816
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
  0.803
EFR30942.1
Phosphogluconate dehydrogenase (decarboxylating), NAD binding domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM PF03807.
    
  0.510
EFR31201.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.505
EFR31314.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
       0.487
rimI
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
 
 0.477
EFR30708.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
 
 0.477
EFR31013.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
 
 0.477
folA
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
    
  0.462
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.