STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR30986.1Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. (453 aa)    
Predicted Functional Partners:
EFR31365.1
Rhodanese family protein.
       0.773
EFR31170.1
Pseudouridylate synthase; Identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
       0.760
EFR31230.1
Putative neutral zinc metallopeptidase; Identified by match to protein family HMM PF04228.
       0.536
EFR30931.1
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
   
 0.535
EFR31765.1
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
   
 0.476
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
    0.420
rpsA
30S ribosomal protein S1; Identified by match to protein family HMM PF00575.
   
    0.402
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.