STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA49607.1Glycosyl transferase family 2. (268 aa)    
Predicted Functional Partners:
SEA49534.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.698
SEA49428.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
    0.660
SEA69246.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.658
SDZ96329.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.599
SEA49568.1
O-Antigen ligase.
  
    0.576
SEA49503.1
UDPglucose 6-dehydrogenase.
  
    0.569
SEA49460.1
dTDP-glucose 4,6-dehydratase.
  
    0.564
SEA54641.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.529
Your Current Organism:
Psychroflexus halocasei
NCBI taxonomy Id: 908615
Other names: CCUG 59705, DSM 23581, LMG 25857, LMG:25857, P. halocasei, Psychroflexus halocasei Seiler et al. 2012, Psychroflexus sp. WS 4520, strain WCC 4520
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.