STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ysdC_2Putative aminopeptidase YsdC. (333 aa)    
Predicted Functional Partners:
ysdC_3
Putative aminopeptidase YsdC.
 
   
0.971
ysdC_1
Putative aminopeptidase YsdC.
 
   
0.904
KRQ87947.1
Manganese containing catalase.
  
    0.597
yciB_1
Putative L,D-transpeptidase YciB precursor.
       0.539
bglB
Beta-glucosidase B.
     
 0.406
Your Current Organism:
Caloramator mitchellensis
NCBI taxonomy Id: 908809
Other names: C. mitchellensis, Caloramator mitchellensis Ogg and Patel 2011, Caloramator sp. VF08, JCM 15828, KCTC 5735, strain VF08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.