STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbTSerine/threonine-protein kinase RsbT. (141 aa)    
Predicted Functional Partners:
KRQ88092.1
DRTGG domain protein.
   
 0.990
KRQ88094.1
Iron hydrogenase 1.
   
 0.978
KRQ88095.1
DRTGG domain protein.
 
   
 0.967
polC_1
DNA polymerase III PolC-type.
 
     0.967
spoIIAA
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.922
kinD
Sporulation kinase D.
 
  
 0.880
dosC
Diguanylate cyclase DosC.
  
 
 0.857
hndB_1
NADP-reducing hydrogenase subunit HndB.
 
     0.801
thiH
2-iminoacetate synthase.
   
    0.796
hndB_2
NADP-reducing hydrogenase subunit HndB.
 
     0.796
Your Current Organism:
Caloramator mitchellensis
NCBI taxonomy Id: 908809
Other names: C. mitchellensis, Caloramator mitchellensis Ogg and Patel 2011, Caloramator sp. VF08, JCM 15828, KCTC 5735, strain VF08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.