STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppD_1Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (334 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein OppC.
 
 0.999
gsiD
Glutathione transport system permease protein GsiD.
 
 0.997
oppB
Oligopeptide transport system permease protein OppB.
 
 0.994
gsiC
Glutathione transport system permease protein GsiC.
 
 0.979
oppA
Oligopeptide-binding protein OppA precursor.
 
 
 0.950
appA
Oligopeptide-binding protein AppA precursor.
 
 
 0.916
ecfA1
Energy-coupling factor transporter ATP-binding protein EcfA1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
     
0.868
hbpA
Heme-binding protein A precursor.
 
 
 0.853
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
 
 
0.823
KRQ88015.1
Hypothetical protein.
  
 
 0.812
Your Current Organism:
Caloramator mitchellensis
NCBI taxonomy Id: 908809
Other names: C. mitchellensis, Caloramator mitchellensis Ogg and Patel 2011, Caloramator sp. VF08, JCM 15828, KCTC 5735, strain VF08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.