Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
gmr_3 | gmr_4 | ABG79_01473 | ABG79_02401 | Cyclic di-GMP phosphodiesterase Gmr. | Cyclic di-GMP phosphodiesterase Gmr. | 0.998 |
gmr_3 | kinA | ABG79_01473 | ABG79_00459 | Cyclic di-GMP phosphodiesterase Gmr. | Sporulation kinase A. | 0.998 |
gmr_3 | phoP_1 | ABG79_01473 | ABG79_00621 | Cyclic di-GMP phosphodiesterase Gmr. | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. | 0.994 |
gmr_3 | phoP_3 | ABG79_01473 | ABG79_01555 | Cyclic di-GMP phosphodiesterase Gmr. | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. | 0.937 |
gmr_3 | pleD | ABG79_01473 | ABG79_00142 | Cyclic di-GMP phosphodiesterase Gmr. | Response regulator PleD. | 0.931 |
gmr_3 | sphR | ABG79_01473 | ABG79_01953 | Cyclic di-GMP phosphodiesterase Gmr. | Alkaline phosphatase synthesis transcriptional regulatory protein SphR. | 0.914 |
gmr_3 | srrA_1 | ABG79_01473 | ABG79_01441 | Cyclic di-GMP phosphodiesterase Gmr. | Transcriptional regulatory protein SrrA. | 0.937 |
gmr_3 | srrA_3 | ABG79_01473 | ABG79_01843 | Cyclic di-GMP phosphodiesterase Gmr. | Transcriptional regulatory protein SrrA. | 0.945 |
gmr_3 | tmoS | ABG79_01473 | ABG79_00617 | Cyclic di-GMP phosphodiesterase Gmr. | Sensor histidine kinase TmoS. | 0.993 |
gmr_3 | walK_1 | ABG79_01473 | ABG79_00346 | Cyclic di-GMP phosphodiesterase Gmr. | Sensor protein kinase WalK. | 0.998 |
gmr_4 | gmr_3 | ABG79_02401 | ABG79_01473 | Cyclic di-GMP phosphodiesterase Gmr. | Cyclic di-GMP phosphodiesterase Gmr. | 0.998 |
gmr_4 | kinA | ABG79_02401 | ABG79_00459 | Cyclic di-GMP phosphodiesterase Gmr. | Sporulation kinase A. | 0.998 |
gmr_4 | phoP_1 | ABG79_02401 | ABG79_00621 | Cyclic di-GMP phosphodiesterase Gmr. | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. | 0.995 |
gmr_4 | phoP_3 | ABG79_02401 | ABG79_01555 | Cyclic di-GMP phosphodiesterase Gmr. | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. | 0.849 |
gmr_4 | pleD | ABG79_02401 | ABG79_00142 | Cyclic di-GMP phosphodiesterase Gmr. | Response regulator PleD. | 0.976 |
gmr_4 | sphR | ABG79_02401 | ABG79_01953 | Cyclic di-GMP phosphodiesterase Gmr. | Alkaline phosphatase synthesis transcriptional regulatory protein SphR. | 0.969 |
gmr_4 | srrA_1 | ABG79_02401 | ABG79_01441 | Cyclic di-GMP phosphodiesterase Gmr. | Transcriptional regulatory protein SrrA. | 0.847 |
gmr_4 | srrA_3 | ABG79_02401 | ABG79_01843 | Cyclic di-GMP phosphodiesterase Gmr. | Transcriptional regulatory protein SrrA. | 0.865 |
gmr_4 | tmoS | ABG79_02401 | ABG79_00617 | Cyclic di-GMP phosphodiesterase Gmr. | Sensor histidine kinase TmoS. | 0.997 |
gmr_4 | walK_1 | ABG79_02401 | ABG79_00346 | Cyclic di-GMP phosphodiesterase Gmr. | Sensor protein kinase WalK. | 0.998 |
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