Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRQ87386.1 | mleN | ABG79_00724 | ABG79_00725 | Putative 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Malate-2H(+)/Na(+)-lactate antiporter. | 0.465 |
alsT | mleN | ABG79_01859 | ABG79_00725 | Amino-acid carrier protein AlsT. | Malate-2H(+)/Na(+)-lactate antiporter. | 0.427 |
dapF | mleN | ABG79_01106 | ABG79_00725 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Malate-2H(+)/Na(+)-lactate antiporter. | 0.413 |
fruA_1 | mleN | ABG79_01996 | ABG79_00725 | PTS system fructose-specific EIIBC component. | Malate-2H(+)/Na(+)-lactate antiporter. | 0.414 |
fruA_1 | ptsG | ABG79_01996 | ABG79_01660 | PTS system fructose-specific EIIBC component. | PTS system glucose-specific EIICB component. | 0.926 |
metK | mleN | ABG79_00526 | ABG79_00725 | S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | Malate-2H(+)/Na(+)-lactate antiporter. | 0.434 |
mleN | KRQ87386.1 | ABG79_00725 | ABG79_00724 | Malate-2H(+)/Na(+)-lactate antiporter. | Putative 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.465 |
mleN | alsT | ABG79_00725 | ABG79_01859 | Malate-2H(+)/Na(+)-lactate antiporter. | Amino-acid carrier protein AlsT. | 0.427 |
mleN | dapF | ABG79_00725 | ABG79_01106 | Malate-2H(+)/Na(+)-lactate antiporter. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.413 |
mleN | fruA_1 | ABG79_00725 | ABG79_01996 | Malate-2H(+)/Na(+)-lactate antiporter. | PTS system fructose-specific EIIBC component. | 0.414 |
mleN | metK | ABG79_00725 | ABG79_00526 | Malate-2H(+)/Na(+)-lactate antiporter. | S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.434 |
mleN | ptsG | ABG79_00725 | ABG79_01660 | Malate-2H(+)/Na(+)-lactate antiporter. | PTS system glucose-specific EIICB component. | 0.408 |
ptsG | fruA_1 | ABG79_01660 | ABG79_01996 | PTS system glucose-specific EIICB component. | PTS system fructose-specific EIIBC component. | 0.926 |
ptsG | mleN | ABG79_01660 | ABG79_00725 | PTS system glucose-specific EIICB component. | Malate-2H(+)/Na(+)-lactate antiporter. | 0.408 |