STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPenicillin-binding protein A. (475 aa)    
Predicted Functional Partners:
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.999
fhaB
FHA domain-containing protein FhaB.
 
   
 0.950
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.949
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.943
divIB
Cell division protein DivIB; Essential cell division protein.
  
 
 0.928
spoVD_1
Stage V sporulation protein D.
  
  
0.892
spoVD_2
Stage V sporulation protein D.
 
  
0.887
KRQ87112.1
Vancomycin high temperature exclusion protein.
       0.770
uvrA
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.762
mreC
Cell shape-determining protein MreC precursor; Involved in formation and maintenance of cell shape.
 
 
 0.752
Your Current Organism:
Caloramator mitchellensis
NCBI taxonomy Id: 908809
Other names: C. mitchellensis, Caloramator mitchellensis Ogg and Patel 2011, Caloramator sp. VF08, JCM 15828, KCTC 5735, strain VF08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.