Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRQ87141.1 | KRQ87142.1 | ABG79_00939 | ABG79_00940 | Hypothetical protein. | Hypothetical protein. | 0.628 |
KRQ87141.1 | addB | ABG79_00939 | ABG79_00938 | Hypothetical protein. | ATP-dependent helicase/deoxyribonuclease subunit B. | 0.596 |
KRQ87141.1 | cheR2_1 | ABG79_00939 | ABG79_02226 | Hypothetical protein. | Chemotaxis protein methyltransferase Cher2. | 0.516 |
KRQ87141.1 | cheR2_2 | ABG79_00939 | ABG79_02433 | Hypothetical protein. | Chemotaxis protein methyltransferase Cher2. | 0.516 |
KRQ87141.1 | rpoA | ABG79_00939 | ABG79_01073 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.664 |
KRQ87141.1 | rpoB | ABG79_00939 | ABG79_02337 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.793 |
KRQ87141.1 | rpoC | ABG79_00939 | ABG79_02338 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.811 |
KRQ87141.1 | rpoZ | ABG79_00939 | ABG79_01111 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.706 |
KRQ87141.1 | topA | ABG79_00939 | ABG79_01160 | Hypothetical protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.534 |
KRQ87141.1 | uvrD1 | ABG79_00939 | ABG79_00937 | Hypothetical protein. | ATP-dependent DNA helicase UvrD1; ATP-dependent DNA helicase. | 0.596 |
KRQ87142.1 | KRQ87141.1 | ABG79_00940 | ABG79_00939 | Hypothetical protein. | Hypothetical protein. | 0.628 |
KRQ87142.1 | addB | ABG79_00940 | ABG79_00938 | Hypothetical protein. | ATP-dependent helicase/deoxyribonuclease subunit B. | 0.491 |
KRQ87142.1 | uvrD1 | ABG79_00940 | ABG79_00937 | Hypothetical protein. | ATP-dependent DNA helicase UvrD1; ATP-dependent DNA helicase. | 0.491 |
addB | KRQ87141.1 | ABG79_00938 | ABG79_00939 | ATP-dependent helicase/deoxyribonuclease subunit B. | Hypothetical protein. | 0.596 |
addB | KRQ87142.1 | ABG79_00938 | ABG79_00940 | ATP-dependent helicase/deoxyribonuclease subunit B. | Hypothetical protein. | 0.491 |
addB | uvrD1 | ABG79_00938 | ABG79_00937 | ATP-dependent helicase/deoxyribonuclease subunit B. | ATP-dependent DNA helicase UvrD1; ATP-dependent DNA helicase. | 0.999 |
cheR2_1 | KRQ87141.1 | ABG79_02226 | ABG79_00939 | Chemotaxis protein methyltransferase Cher2. | Hypothetical protein. | 0.516 |
cheR2_2 | KRQ87141.1 | ABG79_02433 | ABG79_00939 | Chemotaxis protein methyltransferase Cher2. | Hypothetical protein. | 0.516 |
rpoA | KRQ87141.1 | ABG79_01073 | ABG79_00939 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein. | 0.664 |
rpoA | rpoB | ABG79_01073 | ABG79_02337 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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