STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abgBP-aminobenzoyl-glutamate hydrolase subunit B; Belongs to the peptidase M20A family. (371 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase.
       0.628
speA_2
Arginine decarboxylase.
       0.566
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.522
KRQ86769.1
Hypothetical protein.
       0.515
KRQ86767.1
Hypothetical protein; PSP1 C-terminal conserved region.
       0.510
holB
DNA polymerase III subunit delta'.
       0.510
KRQ87463.1
Putative dipeptidase.
    
 0.505
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.487
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
  
 0.474
comM
Competence protein ComM.
  
   0.469
Your Current Organism:
Caloramator mitchellensis
NCBI taxonomy Id: 908809
Other names: C. mitchellensis, Caloramator mitchellensis Ogg and Patel 2011, Caloramator sp. VF08, JCM 15828, KCTC 5735, strain VF08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.