Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRQ85854.1 | KRQ85855.1 | ABG79_02368 | ABG79_02369 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KRQ85854.1 | dnaC_3 | ABG79_02368 | ABG79_02370 | Hypothetical protein. | Replicative DNA helicase. | 0.793 |
KRQ85855.1 | KRQ85854.1 | ABG79_02369 | ABG79_02368 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KRQ85855.1 | dnaC_3 | ABG79_02369 | ABG79_02370 | Hypothetical protein. | Replicative DNA helicase. | 0.773 |
KRQ87798.1 | dnaC_3 | ABG79_00603 | ABG79_02370 | Putative AAA-ATPase. | Replicative DNA helicase. | 0.644 |
KRQ87804.1 | dnaC_3 | ABG79_00609 | ABG79_02370 | Putative AAA-ATPase. | Replicative DNA helicase. | 0.644 |
KRQ87956.1 | dnaC_1 | ABG79_00121 | ABG79_01934 | Hypothetical protein. | DNA replication protein DnaC. | 0.720 |
KRQ87956.1 | dnaC_3 | ABG79_00121 | ABG79_02370 | Hypothetical protein. | Replicative DNA helicase. | 0.707 |
KRQ87956.1 | polA | ABG79_00121 | ABG79_00295 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.476 |
KRQ87956.1 | topA | ABG79_00121 | ABG79_01160 | Hypothetical protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.441 |
dnaA_3 | dnaC_3 | ABG79_02246 | ABG79_02370 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Replicative DNA helicase. | 0.787 |
dnaA_3 | dnaG | ABG79_02246 | ABG79_01622 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.557 |
dnaA_3 | polA | ABG79_02246 | ABG79_00295 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.546 |
dnaA_3 | topA | ABG79_02246 | ABG79_01160 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.519 |
dnaC_1 | KRQ87956.1 | ABG79_01934 | ABG79_00121 | DNA replication protein DnaC. | Hypothetical protein. | 0.720 |
dnaC_1 | dnaC_3 | ABG79_01934 | ABG79_02370 | DNA replication protein DnaC. | Replicative DNA helicase. | 0.672 |
dnaC_3 | KRQ85854.1 | ABG79_02370 | ABG79_02368 | Replicative DNA helicase. | Hypothetical protein. | 0.793 |
dnaC_3 | KRQ85855.1 | ABG79_02370 | ABG79_02369 | Replicative DNA helicase. | Hypothetical protein. | 0.773 |
dnaC_3 | KRQ87798.1 | ABG79_02370 | ABG79_00603 | Replicative DNA helicase. | Putative AAA-ATPase. | 0.644 |
dnaC_3 | KRQ87804.1 | ABG79_02370 | ABG79_00609 | Replicative DNA helicase. | Putative AAA-ATPase. | 0.644 |
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