SBDS protein (Chrysolophus pictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SBDS

SBDS ribosome maturation factor. (250 aa)

Predicted Functional Partners:

ENSCPIP00010018612

0.941

UBA52

0.924

ENSCPIP00010018097

0.907

ENSCPIP00010018098

0.907

RPL11

0.905

RPL35A

0.826

MRTO4

0.826

ENSCPIP00010005227

0.819

RPL5

0.807

EEF2

0.804

Your Current Organism:

Chrysolophus pictus

NCBI taxonomy Id: 9089
Other names: C. pictus, golden pheasant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF2	ENSCPIP00010005227	ENSCPIP00010000193	ENSCPIP00010005227	Eukaryotic translation elongation factor 2.	annotation not available	0.986
EEF2	ENSCPIP00010018612	ENSCPIP00010000193	ENSCPIP00010018612	Eukaryotic translation elongation factor 2.	annotation not available	0.987
EEF2	MRTO4	ENSCPIP00010000193	ENSCPIP00010014170	Eukaryotic translation elongation factor 2.	MRT4 homolog, ribosome maturation factor.	0.881
EEF2	RPL11	ENSCPIP00010000193	ENSCPIP00010007817	Eukaryotic translation elongation factor 2.	Ribosomal protein L11.	0.996
EEF2	RPL35A	ENSCPIP00010000193	ENSCPIP00010003428	Eukaryotic translation elongation factor 2.	Ribosomal protein L35a.	0.992
EEF2	RPL5	ENSCPIP00010000193	ENSCPIP00010009231	Eukaryotic translation elongation factor 2.	Ribosomal protein L5.	0.997
EEF2	SBDS	ENSCPIP00010000193	ENSCPIP00010004863	Eukaryotic translation elongation factor 2.	SBDS ribosome maturation factor.	0.804
EEF2	UBA52	ENSCPIP00010000193	ENSCPIP00010007394	Eukaryotic translation elongation factor 2.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.988
ENSCPIP00010005227	EEF2	ENSCPIP00010005227	ENSCPIP00010000193	annotation not available	Eukaryotic translation elongation factor 2.	0.986
ENSCPIP00010005227	ENSCPIP00010018097	ENSCPIP00010005227	ENSCPIP00010018097	annotation not available	annotation not available	0.744
ENSCPIP00010005227	ENSCPIP00010018098	ENSCPIP00010005227	ENSCPIP00010018098	annotation not available	annotation not available	0.744
ENSCPIP00010005227	ENSCPIP00010018612	ENSCPIP00010005227	ENSCPIP00010018612	annotation not available	annotation not available	0.999
ENSCPIP00010005227	MRTO4	ENSCPIP00010005227	ENSCPIP00010014170	annotation not available	MRT4 homolog, ribosome maturation factor.	0.979
ENSCPIP00010005227	RPL11	ENSCPIP00010005227	ENSCPIP00010007817	annotation not available	Ribosomal protein L11.	0.999
ENSCPIP00010005227	RPL35A	ENSCPIP00010005227	ENSCPIP00010003428	annotation not available	Ribosomal protein L35a.	0.999
ENSCPIP00010005227	RPL5	ENSCPIP00010005227	ENSCPIP00010009231	annotation not available	Ribosomal protein L5.	0.999
ENSCPIP00010005227	SBDS	ENSCPIP00010005227	ENSCPIP00010004863	annotation not available	SBDS ribosome maturation factor.	0.819
ENSCPIP00010005227	UBA52	ENSCPIP00010005227	ENSCPIP00010007394	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSCPIP00010018097	ENSCPIP00010005227	ENSCPIP00010018097	ENSCPIP00010005227	annotation not available	annotation not available	0.744
ENSCPIP00010018097	ENSCPIP00010018098	ENSCPIP00010018097	ENSCPIP00010018098	annotation not available	annotation not available	0.819