Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP42Ubiquitin specific peptidase 42. (724 aa)    
Predicted Functional Partners:
SUDS3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.776
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
    
 0.676
ENSCPIP00010014710
annotation not available
    
 
 0.582
CGAS
Cyclic GMP-AMP synthase.
      
 0.556
IFIH1
Interferon induced with helicase C domain 1.
     
  0.550
CDC25A
Cell division cycle 25A.
    
 0.543
BRMS1L
BRMS1 like transcriptional repressor.
    
  0.514
DHX58
DExH-box helicase 58.
     
 0.485
LAMP1
Lysosomal associated membrane protein 1.
      
 0.464
C7orf26
Chromosome 7 open reading frame 26.
      
 0.459
Your Current Organism:
Chrysolophus pictus
NCBI taxonomy Id: 9089
Other names: C. pictus, golden pheasant
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