Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX10Sorting nexin 10. (201 aa)    
Predicted Functional Partners:
VPS35
VPS35 retromer complex component.
    
 0.833
VPS29
VPS29 retromer complex component.
   
 0.797
RPS6KC1
Ribosomal protein S6 kinase C1.
     
 0.714
GARS1
glycyl-tRNA synthetase 1.
      
 0.674
VPS26B
VPS26, retromer complex component B.
    
 0.671
VPS26A
VPS26, retromer complex component A.
    
 0.671
PLEKHM1
Pleckstrin homology and RUN domain containing M1.
      
 0.597
HS1BP3
HCLS1 binding protein 3.
      
 0.588
OSTM1
Osteoclastogenesis associated transmembrane protein 1.
      
 0.582
SNX22
Sorting nexin 22.
     
 0.574
Your Current Organism:
Chrysolophus pictus
NCBI taxonomy Id: 9089
Other names: C. pictus, golden pheasant
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