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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASC3CASC3 exon junction complex subunit. (705 aa)    
Predicted Functional Partners:
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 0.999
UPF1
UPF1 RNA helicase and ATPase.
    
 0.996
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.994
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.971
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.967
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
  0.966
YJU2
YJU2 splicing factor homolog.
    
  0.960
CWC25
CWC25 spliceosome associated protein homolog.
    
  0.960
PRPF8
pre-mRNA processing factor 8.
    
  0.960
RANBP2
RAN binding protein 2.
    
  0.955
Your Current Organism:
Chrysolophus pictus
NCBI taxonomy Id: 9089
Other names: C. pictus, golden pheasant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.