Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSM11LSM11, U7 small nuclear RNA associated. (211 aa)    
Predicted Functional Partners:
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.996
ENSCPIP00010004449
annotation not available
    
 0.992
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
    
 0.983
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
    
 0.963
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 
 0.959
DDX20
DEAD-box helicase 20.
    
 
 0.958
ENSCPIP00010008662
annotation not available
    
 
 0.927
ENSCPIP00010018734
annotation not available
    
 
 0.905
PRMT5
Protein arginine methyltransferase 5.
    
 
 0.887
CPSF2
Cleavage and polyadenylation specific factor 2.
    
 
 0.852
Your Current Organism:
Chrysolophus pictus
NCBI taxonomy Id: 9089
Other names: C. pictus, golden pheasant
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