STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_0183Putative lyase. (139 aa)    
Predicted Functional Partners:
UO65_0184
Transcriptional regulator, AraC family.
 
    0.956
UO65_0182
Excinuclease ABC subunit A.
     0.856
UO65_0185
Transcriptional regulator, DeoR family.
 
     0.804
UO65_4772
Transcriptional regulator, AraC family.
 
    0.779
UO65_6680
Nicotinamide-nucleotide adenylyltransferase, NadR family; Ribosylnicotinamide kinase.
   
    0.764
UO65_4514
Lactoylglutathione lyase.
 
 
  0.671
UO65_6192
Hypothetical protein.
 
 
  0.606
UO65_0045
Transcriptional regulator, SARP family.
  
    0.588
UO65_2863
Regulatory protein.
  
    0.562
UO65_0186
Hypothetical protein.
       0.557
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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