STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_1532N-acetylmuramoyl-L-alanine amidase. (212 aa)    
Predicted Functional Partners:
UO65_6269
N-acetylmuramoyl-L-alanine amidase.
    
0.937
UO65_1894
Hypothetical protein.
    
   0.835
UO65_6129
Rhomboid family protein.
  
   0.769
UO65_6241
Rhomboid family serine protease; FIG056164.
  
   0.769
UO65_1531
Acylamino-acid-releasing enzyme.
       0.671
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
     
 0.671
UO65_1639
Cell division protein FtsW; Belongs to the SEDS family.
  
  
 0.643
UO65_6416
Hypothetical protein.
 
  
 0.593
UO65_1533
Hypothetical protein.
       0.566
UO65_1534
Hypothetical protein co-occurring with RecR; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.556
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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