STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_1830Putative transmembrane transport protein. (569 aa)    
Predicted Functional Partners:
UO65_1829
Transcriptional regulator, GntR family.
 
  
 0.843
UO65_4989
Hypothetical protein.
 
 
 0.795
UO65_1456
Putative lipoprotein.
 
 
 0.793
UO65_1828
Putative ABC transporter ATP-binding protein.
 
    
0.790
UO65_5153
ABC-type multidrug transport system, ATPase component.
 
  0.764
UO65_0173
Methionine ABC transporter ATP-binding protein.
 
  0.740
UO65_3198
ABC transporter, ATP-binding component.
 
  0.700
UO65_4686
Hypothetical protein.
  
     0.683
UO65_2504
Putative ABC transporter ATP-binding component.
 
  0.681
UO65_4349
ABC transporter, ATP-binding protein.
 
 
0.678
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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