STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_3299Hypothetical protein; FIG00820627. (158 aa)    
Predicted Functional Partners:
UO65_3054
Uncharacterized protein Q1 colocalized with Q.
  
     0.758
UO65_3089
Hypothetical protein; FIG01121218.
  
     0.756
UO65_1648
Putative membrane protein; FIG021764.
  
     0.755
UO65_0033
Hypothetical protein; FIG01121360.
  
     0.736
UO65_4592
DNA polymerase III delta subunit.
  
     0.725
UO65_2498
Histone protein Lsr2.
  
     0.692
UO65_5181
Putative secreted protein.
  
     0.666
UO65_0903
Histone protein Lsr2.
  
     0.656
UO65_1119
Putative phosphatase; COG0406.
  
     0.653
UO65_5928
Putative transcriptional regulator.
  
     0.643
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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