STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_3705Cell division initiation protein. (250 aa)    
Predicted Functional Partners:
UO65_5183
Multimodular transpeptidase-transglycosylase.
 
 
 
 0.889
UO65_6325
Multimodular transpeptidase-transglycosylase.
   
 
 0.859
UO65_3706
Protein, clustered with ribosomal protein L32p; COG1399.
     
 0.855
UO65_3997
Hypothetical protein; FIG026501.
  
   
 0.769
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
     
 0.756
UO65_5546
Secreted protein; FIG027937.
  
     0.747
UO65_1144
Putative membrane protein.
  
     0.734
UO65_2751
Putative membrane protein.
  
     0.734
UO65_5997
Putative membrane protein.
  
     0.707
UO65_3090
Putative secreted alanine rich protein.
  
     0.704
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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