STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_3842ABC transporter (iron.B12.siderophore.hemin), periplasmic substrate-binding component. (368 aa)    
Predicted Functional Partners:
UO65_3840
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
 
  0.983
UO65_3841
ABC transporter (iron.B12.siderophore.hemin), permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.980
UO65_0337
ABC transporter (iron.B12.siderophore.hemin), permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.932
UO65_0338
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
 
  0.926
UO65_5467
ABC transporter (iron.B12.siderophore.hemin), permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.916
UO65_3836
ABC transporter (iron.B12.siderophore.hemin), permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.911
UO65_5331
ABC transporter (iron.B12.siderophore.hemin), permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.906
UO65_5330
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
 
  0.879
UO65_3837
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
 
  0.877
UO65_1039
Hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.849
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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