STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_5123Oligopeptide transport ATP-binding protein OppF; TCDB 3.A.1.5.1; Belongs to the ABC transporter superfamily. (540 aa)    
Predicted Functional Partners:
UO65_5122
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.995
UO65_5377
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 
 0.971
UO65_4537
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.965
UO65_0677
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.961
UO65_5121
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 0.961
UO65_1883
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 
 0.954
UO65_1482
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.944
UO65_5120
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
 
 0.934
UO65_5095
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 
 0.931
UO65_1537
Oligopeptide transport integral membrane protein.
 
 0.897
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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