STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_5775Transcriptional regulator, TetR family. (190 aa)    
Predicted Functional Partners:
UO65_5776
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.701
UO65_6426
Putative conserved transmembrane protein.
  
     0.689
UO65_5888
Hypothetical protein; FIG025412.
  
     0.621
UO65_5774
Hypothetical protein.
       0.565
UO65_1847
Hypothetical protein.
  
   
 0.557
UO65_6102
Hypothetical protein.
  
     0.556
UO65_6076
Hypothetical protein.
   
    0.541
UO65_1144
Putative membrane protein.
  
     0.535
UO65_6006
Hypothetical protein.
  
     0.533
UO65_2930
Putative conserved membrane protein.
  
     0.515
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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