STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_5829Putative two-component system response regulator. (85 aa)    
Predicted Functional Partners:
UO65_5830
Two-component system sensor kinase.
 
  0.907
UO65_3779
GGDEF domain protein.
  
 0.821
UO65_5828
DNA-binding response regulator, LuxR family.
      0.773
UO65_5827
Hypothetical protein.
  
    0.678
UO65_4509
Serine phosphatase RsbU, regulator of sigma subunit.
   
 0.676
UO65_5488
Serine phosphatase RsbU, regulator of sigma subunit.
   
 0.676
UO65_6460
Serine phosphatase RsbU, regulator of sigma subunit.
   
 0.676
UO65_5826
L-fuco-beta-pyranose dehydrogenase.
       0.656
UO65_4690
Putative two-component system sensor kinase.
 
  0.637
UO65_0560
GAF:ATP-binding region, ATPase-like.
  
 0.613
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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