STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_6184Outer membrane protein, OmpA/MotB family. (320 aa)    
Predicted Functional Partners:
UO65_6512
Chitinase; Belongs to the glycosyl hydrolase 18 family.
    
  0.702
UO65_6185
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
       0.505
UO65_1971
RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.498
UO65_3132
RNA polymerase sigma factor SigB; Belongs to the sigma-70 factor family.
  
 
 0.498
UO65_3690
RNA polymerase sigma factor SigB; Belongs to the sigma-70 factor family.
  
 
 0.498
UO65_4758
RNA polymerase sigma factor SigB; Belongs to the sigma-70 factor family.
  
 
 0.498
UO65_2752
Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
  
    0.477
UO65_2975
Folylpolyglutamate synthase.
  
    0.477
UO65_3826
Poly-gamma-glutamate synthase subunit PgsB/CapB.
  
    0.477
UO65_6269
N-acetylmuramoyl-L-alanine amidase.
    
  0.408
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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