STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_6502Phytoene dehydrogenase. (501 aa)    
Predicted Functional Partners:
UO65_6503
Phytoene synthase.
 
 0.995
UO65_0021
Lycopene beta cyclase.
 
 
 0.878
UO65_1392
phi-Carotenoid synthase.
 
  
 0.783
UO65_6504
CrtT-methyltransferase-like protein.
 
  
  0.738
UO65_6501
Dimethylallyltransferase; (2E,6E)-farnesyl diphosphate synthase; Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.673
UO65_2901
Carotenoid cis-trans isomerase.
  
     0.652
UO65_0547
Involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis.
 
 
 0.642
UO65_2872
Phytoene dehydrogenase.
 
  
 
0.621
UO65_2902
Carotenoid cis-trans isomerase.
 
     0.591
UO65_2189
Putative oxidoreductase.
  
  
 
0.588
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.