STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UO65_6675Peptidyl-prolyl cis-trans isomerase. (247 aa)    
Predicted Functional Partners:
UO65_4692
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.890
UO65_2012
ATP-dependent RNA helicase.
 
 0.862
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 0.859
UO65_4728
ATP-dependent RNA helicase.
 
 0.859
UO65_1074
Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
 
 0.853
UO65_0800
Polyketide synthase.
   
 
 0.847
UO65_1871
Non-ribosomal peptide synthetase.
   
 
 0.847
UO65_0528
Non-ribosomal peptide synthetase.
   
   0.846
UO65_0970
Non-ribosomal peptide synthase.
   
   0.846
UO65_1872
Non-ribosomal peptide synthetase.
   
   0.846
Your Current Organism:
Actinokineospora spheciospongiae
NCBI taxonomy Id: 909613
Other names: A. spheciospongiae, Actinokineospora sp. EG49, Actinokineospora spheciospongiae Kampfer et al. 2015 emend. Nouioui et al. 2018, CCM 8480, DSM 45935, LMG 27700, LMG:27700, strain EG49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.