STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000512235_00077Unannotated protein. (278 aa)    
Predicted Functional Partners:
DCZ04_15725
Unannotated protein.
  
 0.991
DCZ04_02175
Unannotated protein.
   
 0.984
GCA_000512235_00078
Unannotated protein.
     0.982
GCA_000512235_03151
Unannotated protein.
    
  0.962
DCZ04_13615
Unannotated protein.
    
 0.962
GCA_000512235_00079
Unannotated protein.
 
 
   0.955
GCA_000512235_00081
Unannotated protein.
 
     0.953
DCZ04_05170
Unannotated protein.
   
 0.903
atpB
Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
   
 0.854
DCZ04_02205
Unannotated protein.
   
 0.854
Your Current Organism:
Syntrophorhabdus aromaticivorans
NCBI taxonomy Id: 909663
Other names: S. aromaticivorans UI, Syntrophorhabdus aromaticivorans UI, Syntrophorhabdus aromaticivorans str. UI, Syntrophorhabdus aromaticivorans strain UI, delta proteobacterium UI
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.