STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCZ04_08075Unannotated protein; Belongs to the sigma-70 factor family. (245 aa)    
Predicted Functional Partners:
fliM
Unannotated protein.
 
 
 0.987
fliN
Unannotated protein.
 
  
 0.987
fliQ
Unannotated protein; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
  
 0.984
DCZ04_13950
Unannotated protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.978
DCZ04_03265
Unannotated protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.976
rpoC
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.974
flgC
Unannotated protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.972
rpoB
Unannotated protein; Belongs to the RNA polymerase beta chain family.
    
 
 0.970
DCZ04_03255
Unannotated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.970
DCZ04_03260
Unannotated protein.
 
  
 0.968
Your Current Organism:
Syntrophorhabdus aromaticivorans
NCBI taxonomy Id: 909663
Other names: S. aromaticivorans UI, Syntrophorhabdus aromaticivorans UI, Syntrophorhabdus aromaticivorans str. UI, Syntrophorhabdus aromaticivorans strain UI, delta proteobacterium UI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.