STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCZ04_07500Unannotated protein. (2566 aa)    
Predicted Functional Partners:
GCA_000512235_03306
Unannotated protein.
  
 0.743
DCZ04_07505
Unannotated protein.
  
 
 0.700
DCZ04_06565
Unannotated protein.
  
0.652
DCZ04_03700
Unannotated protein.
 
 
 0.624
GCA_000512235_00192
Unannotated protein.
    
 
 0.618
DCZ04_02910
Unannotated protein.
    
 
 0.618
DCZ04_07470
Unannotated protein.
 
  
 0.604
rfbB
Unannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.601
DCZ04_02885
Unannotated protein.
  
 
 0.598
GCA_000512235_00463
Unannotated protein.
   
 0.555
Your Current Organism:
Syntrophorhabdus aromaticivorans
NCBI taxonomy Id: 909663
Other names: S. aromaticivorans UI, Syntrophorhabdus aromaticivorans UI, Syntrophorhabdus aromaticivorans str. UI, Syntrophorhabdus aromaticivorans strain UI, delta proteobacterium UI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.