STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI49710.1Dioxygenase, isopenicillin N synthase; PFAM: 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family. (330 aa)    
Predicted Functional Partners:
EHI49711.1
Hypothetical protein.
       0.646
EHI49712.1
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
       0.642
EHI49713.1
PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
       0.642
EHI49707.1
Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
       0.536
EHI49708.1
Hypothetical protein.
       0.536
EHI49709.1
Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
       0.536
EHI49714.1
TRAP-type C4-dicarboxylate transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein, family 7.
       0.471
Your Current Organism:
SAR116 cluster
NCBI taxonomy Id: 909943
Other names: S. cluster alpha proteobacterium HIMB100, SAR116 cluster alpha proteobacterium HIMB100
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